共著　プレスリリース

Potente, G., Yasui, Y., Shimokawa, E., Jenkins, J., Walstead, R. N., Grimwood, J., Schmutz, J., Leebens-Mack, J., Bruna, T., Kaur, N., Lee, R., Zama, S., Tanaka, T., Umeya, Y., Kawamura, S., Yamato, K. T., Yamaguchi, K., Shigenobu, S., Shimamura, M., Kohchi, T., … Szövényi, P. (2025). Insights into convergent evolution of cosexuality in liverworts from the Marchantia quadrata genome. Cell reports, 44(4), 115503. Advance online publication. https://doi.org/10.1016/j.celrep.2025.115503 

共著　プレスリリース

Ito, K., Hirakawa, T., Shigenobu, S., Fujiyoshi, H., & Yamashita, T. (2025). Mouse-Geneformer: A deep learning model for mouse single-cell transcriptome and its cross-species utility. PLoS genetics, 21(3), e1011420. https://doi.org/10.1371/journal.pgen.1011420 

謝辞　プレスリリース

Nozaki, T., Chikami, Y., Yano, K., Sato, R., Suetsugu, K., & Kaneko, S. (2025). Lack of successful sexual reproduction suggests the irreversible parthenogenesis in a stick insect. Ecology, 106(1), e4522. https://doi.org/10.1002/ecy.4522 

共著

Iwai, H., Kurihara, Y., Kono, N., Hojo, M. K., Yamaguchi, K., Shigenobu, S., Ozaki, M., Koto, A., & Arakawa, K. (2025). Genome Assembly of the temporary socially parasitic spiny ant Polyrhachis lamellidens and its host Camponotus japonicus. DNA research, dsaf005. Advance online publication. https://doi.org/10.1093/dnares/dsaf005  

共著

Yamaguchi, M., Shigenobu, S., Yamaguchi, K., Higashi, Y., Okazaki, Y., Saito, K., Mishiro-Sato, E., Kano, K., Sugiyama, R., Yamazaki, M., Sugano, S. S., Fukuyoshi, S., Ueda, H., Hara-Nishimura, I., & Shimada, T. L. (2025). LIPID RICH 1 Modulates Allocation of Carbon between Starch and Triacylglycerol in Arabidopsis Leaves. Journal of experimental botany, eraf048. Advance online publication. https://doi.org/10.1093/jxb/eraf048 

共著

Lee, J., Fujimoto, T., Yamaguchi, K., Shigenobu, S., Sahara, K., & Shimada, T. (2025). Comprehensive genome annotation of Trilocha varians, a new model species of Lepidopteran insects. Scientific data, 12(1), 124. https://doi.org/10.1038/s41597-025-04411-3 

共著

Liu, L., Kitano, J., Shigenobu, S., & Ishikawa, A. (2025). Co-profiling of single-cell gene expression and chromatin landscapes in stickleback pituitary. Scientific data, 12(1), 41. https://doi.org/10.1038/s41597-025-04376-3 

共著

Lee, J., Kiuchi, T., Yamaguchi, K., Shigenobu, S., Toyoda, A., & Shimada, T. (2025). A chromosome-level genome assembly of wild silkmoth, Bombyx mandarina. Scientific data, 12(1), 27. https://doi.org/10.1038/s41597-025-04395-0 

共著

Kawade, K., Nozaki, M., Horiguchi, G., Mori, T., Yamaguchi, K., Okamoto, M., Tabeta, H., Shigenobu, S., Hirai, M. Y., & Tsukaya, H. (2025). Loss-of-functional mutation in ANGUSTIFOLIA3 causes leucine hypersensitivity and hypoxia response during Arabidopsis thaliana seedling growth. Metabolomics, 21(2), 46. https://doi.org/10.1007/s11306-025-02249-9 

Yoshida, T., Fernie, A.R. The protein phosphatases of abscisic acid coreceptors mediate carbon metabolism in Arabidopsis. Theor. Exp. Plant Physiol. 37, 15 (2025). https://doi.org/10.1007/s40626-024-00362-z 

共著　プレスリリース

Miura, C., Furui, Y., Yamamoto, T., Kanno, Y., Honjo, M., Yamaguchi, K., Suetsugu, K., Yagame, T., Seo, M., Shigenobu, S., Yamato, M., & Kaminaka, H. (2024). Autoactivation of mycorrhizal symbiosis signaling through gibberellin deactivation in orchid seed germination. Plant physiology, 194(1), 546–563. https://doi.org/10.1093/plphys/kiad517 

共著　プレスリリース

Konuma, J., Fujisawa, T., Nishiyama, T., Kasahara, M., Shibata, T. F., Nozawa, M., Shigenobu, S., Toyoda, A., Hasebe, M., & Sota, T. (2024). Odd-Paired is Involved in Morphological Divergence of Snail-Feeding Beetles. Molecular biology and evolution, 41(6), msae110. https://doi.org/10.1093/molbev/msae110 

共著　プレスリリース

Tsuboi, E., Ono, S. F., Cordeiro, I. R., Yu, R., Kawanishi, T., Koizumi, M., Shigenobu, S., Sheng, G., Okabe, M., & Tanaka, M. (2024). Immobilization secondary to cell death of muscle precursors with a dual transcriptional signature contributes to the emu wing skeletal pattern. Nature communications, 15(1), 8153. https://doi.org/10.1038/s41467-024-52203-x

共著・謝辞　プレスリリース

Nagura, K., Ikeda, T., Hasebe, T., Satou-Kobayashi, Y., Udagawa, S., Shigenobu, S., Ishizuya-Oka, A., & Taira, M. (2024). Histological and gene-expression analyses of pyloric sphincter formation during stomach metamorphosis in Xenopus laevis. Developmental biology, 517, 100–116. Advance online publication. https://doi.org/10.1016/j.ydbio.2024.09.010 

謝辞　プレスリリース

Kamada, Y., Umeda, C., Mukai, Y., Ohtsuka, H., Otsubo, Y., Yamashita, A., & Kosugi, T. (2024). Structure-based engineering of Tor complexes reveals that two types of yeast TORC1 produce distinct phenotypes. Journal of cell science, 137(4), jcs261625. https://doi.org/10.1242/jcs.261625 

謝辞　プレスリリース

Miyazaki, Y., Otsuka, T., Yamagata, Y., Endo, T., Sanbo, M., Sano, H., Kobayashi, K., Inahashi, H., Kornau, H. C., Schmitz, D., Prüss, H., Meijer, D., Hirabayashi, M., Fukata, Y., & Fukata, M. (2024). Oligodendrocyte-derived LGI3 and its receptor ADAM23 organize juxtaparanodal Kv1 channel clustering for short-term synaptic plasticity. Cell reports, 43(1), 113634. https://doi.org/10.1016/j.celrep.2023.113634 

謝辞　プレスリリース

Sakuma, K., Kobayashi, N., Sugiki, T., Nagashima, T., Fujiwara, T., Suzuki, K., Kobayashi, N., Murata, T., Kosugi, T., Tatsumi-Koga, R., & Koga, N. (2024). Design of complicated all-α protein structures. Nature structural & molecular biology, 31(2), 275–282. https://doi.org/10.1038/s41594-023-01147-9 

謝辞　プレスリリース

Kurashima, K., Kamikawa, Y., & Tsubouchi, T. (2024). Embryonic stem cells maintain high origin activity and slow forks to coordinate replication with cell cycle progression. EMBO reports, 25(9), 3757–3776. https://doi.org/10.1038/s44319-024-00207-5 

共著

Sakamoto, F., Kanamori, S., Díaz, L. M., Cádiz, A., Ishii, Y., Yamaguchi, K., Shigenobu, S., Nakayama, T., Makino, T., & Kawata, M. (2024). Detection of evolutionary conserved and accelerated genomic regions related to adaptation to thermal niches in Anolis lizards. Ecology and evolution, 14(3), e11117. https://doi.org/10.1002/ece3.11117 

共著

Lee, J., Fujimoto, T., Yamaguchi, K., Shigenobu, S., Sahara, K., Toyoda, A., & Shimada, T. (2024). W chromosome sequences of two bombycid moths provide an insight into the origin of Fem. Molecular ecology, 33(14), e17434. https://doi.org/10.1111/mec.17434 

共著

Pujasatria, G. C., Miura, C., Yamaguchi, K., Shigenobu, S., & Kaminaka, H. (2024). Colonization by orchid mycorrhizal fungi primes induced systemic resistance against necrotrophic pathogen. Frontiers in plant science, 15, 1447050. https://doi.org/10.3389/fpls.2024.1447050 

共著

Katsura, Y., Shigenobu, S., & Satta, Y. (2024). Adaptive Evolution and Functional Differentiation of Testis-Expressed Genes in Theria. Animals : an open access journal from MDPI, 14(16), 2316. https://doi.org/10.3390/ani14162316

共著

Fujino, T., Yamaguchi, K., Yokoyama, T. T., Hamanaka, T., Harazono, Y., Kamada, H., Kobayashi, W., Ujino-Ihara, T., Uchiyama, K., Matsumoto, A., Izuno, A., Tsumura, Y., Toyoda, A., Shigenobu, S., Moriguchi, Y., Ueno, S., & Kasahara, M. (2024). A chromosome-level genome assembly of a model conifer plant, the Japanese cedar, Cryptomeria japonica D. Don. BMC genomics, 25(1), 1039. https://doi.org/10.1186/s12864-024-10929-4 

Yoshida, T., & Fernie, A. R. (2024). Hormonal regulation of plant primary metabolism under drought. Journal of experimental botany, 75(6), 1714–1725. https://doi.org/10.1093/jxb/erad358 

Yoshida, T., Mergner, J., Yang, Z., Liu, J., Kuster, B., Fernie, A. R., & Grill, E. (2024). Integrating multi-omics data reveals energy and stress signaling activated by abscisic acid in Arabidopsis. The Plant journal : for cell and molecular biology, 119(2), 1112–1133. https://doi.org/10.1111/tpj.16765 

共著・謝辞　プレスリリース

Kobayashi, Y., Shibata, T. F., Hirakawa, H., Nishiyama, T., Yamada, A., Hasebe, M., Shigenobu, S., & Kawaguchi, M. (2023). The genome of Lyophyllum shimeji provides insight into the initial evolution of ectomycorrhizal fungal genomes. DNA research : an international journal for rapid publication of reports on genes and genomes, 30(1), dsac053. https://doi.org/10.1093/dnares/dsac053 

共著　プレスリリース

Morita, S., Shibata, T. F., Nishiyama, T., Kobayashi, Y., Yamaguchi, K., Toga, K., Ohde, T., Gotoh, H., Kojima, T., Weber, J. N., Salvemini, M., Bino, T., Mase, M., Nakata, M., Mori, T., Mori, S., Cornette, R., Sakura, K., Lavine, L. C., Emlen, D. J., … Shigenobu, S. (2023). The draft genome sequence of the Japanese rhinoceros beetle Trypoxylus dichotomus septentrionalis towards an understanding of horn formation. Scientific reports, 13(1), 8735. https://doi.org/10.1038/s41598-023-35246-w

共著　プレスリリース

Toyota, K., Yamamoto, T., Mori, T., Mekuchi, M., Miyagawa, S., Ihara, M., Shigenobu, S., & Ohira, T. (2023). Eyestalk transcriptome and methyl farnesoate titers provide insight into the physiological changes in the male snow crab, Chionoecetes opilio, after its terminal molt. Scientific reports, 13(1), 7204. https://doi.org/10.1038/s41598-023-34159-y 

共著　プレスリリース

Tominaga, T., Ueno, K., Saito, H., Egusa, M., Yamaguchi, K., Shigenobu, S., & Kaminaka, H. (2023). Monoterpene glucosides in Eustoma grandiflorum roots promote hyphal branching in arbuscular mycorrhizal fungi. Plant physiology, 193(4), 2677–2690. https://doi.org/10.1093/plphys/kiad482

謝辞　プレスリリース

Kanai, M., Sugiyama, M., Kondo, M., Yamada, K., Nishimura, M., & Mano, S. (2023). Fusing the 3'UTR of seed storage protein genes leads to massive recombinant protein accumulation in seeds. Scientific reports, 13(1), 12217. https://doi.org/10.1038/s41598-023-39356-3 

謝辞　プレスリリース

Kim, E., Yokono, M., Tsugane, K., Ishii, A., Noda, C., & Minagawa, J. (2023). Formation of a Stable PSI-PSII Megacomplex in Rice That Conducts Energy Spillover. Plant & cell physiology, 64(8), 858–865. https://doi.org/10.1093/pcp/pcad037 

謝辞　プレスリリース

Ishii, A., Shan, J., Sheng, X., Kim, E., Watanabe, A., Yokono, M., Noda, C., Song, C., Murata, K., Liu, Z., & Minagawa, J. (2023). The photosystem I supercomplex from a primordial green alga Ostreococcus tauri harbors three light-harvesting complex trimers. eLife, 12, e84488. https://doi.org/10.7554/eLife.84488 

謝辞　プレスリリース

Yagi-Utsumi, M., Itoh, S. G., Okumura, H., Yanagisawa, K., Kato, K., & Nishimura, K. (2023). The Double-Layered Structure of Amyloid-β Assemblage on GM1-Containing Membranes Catalytically Promotes Fibrillization. ACS chemical neuroscience, 14(15), 2648–2657. https://doi.org/10.1021/acschemneuro.3c00192 

謝辞　プレスリリース

Minami, S., Kobayashi, N., Sugiki, T., Nagashima, T., Fujiwara, T., Tatsumi-Koga, R., Chikenji, G., & Koga, N. (2023). Exploration of novel αβ-protein folds through de novo design. Nature structural & molecular biology, 30(8), 1132–1140. https://doi.org/10.1038/s41594-023-01029-0

謝辞　プレスリリース

Kosugi, M., Kawasaki, M., Shibata, Y., Hara, K., Takaichi, S., Moriya, T., Adachi, N., Kamei, Y., Kashino, Y., Kudoh, S., Koike, H., & Senda, T. (2023). Uphill energy transfer mechanism for photosynthesis in an Antarctic alga. Nature communications, 14(1), 730. https://doi.org/10.1038/s41467-023-36245-1

共著

Ishikawa, M., Fujiwara, A., Kosetsu, K., Horiuchi, Y., Kamamoto, N., Umakawa, N., Tamada, Y., Zhang, L., Matsushita, K., Palfalvi, G., Nishiyama, T., Kitasaki, S., Masuda, Y., Shiroza, Y., Kitagawa, M., Nakamura, T., Cui, H., Hiwatashi, Y., Kabeya, Y., Shigenobu, S., … Kofuji, R. (2023). GRAS transcription factors regulate cell division planes in moss overriding the default rule. Proceedings of the National Academy of Sciences of the United States of America, 120(4), e2210632120. https://doi.org/10.1073/pnas.2210632120 

共著

Sotta, N., Sakamoto, T., Kamiya, T., Tabata, R., Yamaguchi, K., Shigenobu, S., Yamada, M., Hasebe, M., Sawa, S., & Fujiwara, T. (2023). NAC103 mutation alleviates DNA damage in an Arabidopsis thaliana mutant sensitive to excess boron. Frontiers in plant science, 14, 1099816. https://doi.org/10.3389/fpls.2023.1099816 

共著

Suzuki, R. H., Hanada, T., Hayashi, Y., Shigenobu, S., Maekawa, K., & Hojo, M. K. (2023). Gene expression profiles of chemosensory genes of termite soldier and worker antennae. Insect molecular biology, 32(4), 424–435. https://doi.org/10.1111/imb.12841 

共著

Nikaido, M., Shirai, A., Mizumaki, Y., Shigenobu, S., Ueno, N., & Hatta, K. (2023). Intestinal expression patterns of transcription factors and markers for interstitial cells in the larval zebrafish. Development, growth & differentiation, 65(7), 418–428. https://doi.org/10.1111/dgd.12878 

共著

Kakui, H., Ujino-Ihara, T., Hasegawa, Y., Tsurisaki, E., Futamura, N., Iwai, J., Higuchi, Y., Fujino, T., Suzuki, Y., Kasahara, M., Yamaguchi, K., Shigenobu, S., Otani, M., Nakano, M., Nameta, M., Shibata, S., Ueno, S., & Moriguchi, Y. (2023). A single-nucleotide substitution of CjTKPR1 determines pollen production in the gymnosperm plant Cryptomeria japonica. PNAS nexus, 2(8), pgad236. https://doi.org/10.1093/pnasnexus/pgad236 

謝辞

Nozaki, T., Tasaki, E., & Matsuura, K. (2023). Cell type specific polyploidization in the royal fat body of termite queens. Zoological letters, 9(1), 20. https://doi.org/10.1186/s40851-023-00217-6

共著　プレスリリース

Shigenobu, S., Hayashi, Y., Watanabe, D., Tokuda, G., Hojo, M. Y., Toga, K., Saiki, R., Yaguchi, H., Masuoka, Y., Suzuki, R., Suzuki, S., Kimura, M., Matsunami, M., Sugime, Y., Oguchi, K., Niimi, T., Gotoh, H., Hojo, M. K., Miyazaki, S., Toyoda, A., … Maekawa, K. (2022). Genomic and transcriptomic analyses of the subterranean termite Reticulitermes speratus: Gene duplication facilitates social evolution. Proceedings of the National Academy of Sciences of the United States of America, 119(3), e2110361119. https://doi.org/10.1073/pnas.2110361119 

共著　プレスリリース

Okamoto, S., Kawasaki, A., Makino, Y., Ishida, T., & Sawa, S. (2022). Long-distance translocation of CLAVATA3/ESR-related 2 peptide and its positive effect on roots sucrose status. Plant physiology, 189(4), 2357–2367. https://doi.org/10.1093/plphys/kiac227 

共著　プレスリリース

Goto, T., Soyano, T., Liu, M., Mori, T., & Kawaguchi, M. (2022). Auxin methylation by IAMT1, duplicated in the legume lineage, promotes root nodule development in Lotus japonicus. Proceedings of the National Academy of Sciences of the United States of America, 119(10), e2116549119. https://doi.org/10.1073/pnas.2116549119 

謝辞　プレスリリース

Hirano, K., Nonami, Y., Nakamura, Y., Sato, T., Sato, T., Ishiguro, K. I., Ogawa, T., & Yoshida, S. (2022). Temperature sensitivity of DNA double-strand break repair underpins heat-induced meiotic failure in mouse spermatogenesis. Communications biology, 5(1), 504. https://doi.org/10.1038/s42003-022-03449-y 

謝辞　プレスリリース

Kinoshita, N., Yamamoto, T. S., Yasue, N., Takagi, C., Fujimori, T., & Ueno, N. (2022). Force-dependent remodeling of cytoplasmic ZO-1 condensates contributes to cell-cell adhesion through enhancing tight junctions. iScience, 25(2), 103846. https://doi.org/10.1016/j.isci.2022.103846 

謝辞　プレスリリース

Derouiche, S., Li, T., Sakai, Y., Uta, D., Aoyagi, S., & Tominaga, M. (2022). Inhibition of transient receptor potential vanilloid 1 and transient receptor potential ankyrin 1 by mosquito and mouse saliva. Pain, 163(2), 299–307. https://doi.org/10.1097/j.pain.0000000000002337

共著

Ishida, S., Suzuki, H., Iwaki, A., Kawamura, S., Yamaoka, S., Kojima, M., Takebayashi, Y., Yamaguchi, K., Shigenobu, S., Sakakibara, H., Kohchi, T., & Nishihama, R. (2022). Diminished Auxin Signaling Triggers Cellular Reprogramming by Inducing a Regeneration Factor in the Liverwort Marchantia polymorpha. Plant & cell physiology, 63(3), 384–400. https://doi.org/10.1093/pcp/pcac004 

共著

Miura, T., Oguchi, K., Yamaguchi, H., Nakamura, M., Sato, D., Kobayashi, K., ... & Ishiguro, A. (2022). Understanding of superorganisms: collective behavior, differentiation and social organization. Artificial Life and Robotics, 27(2), 204-212. https://doi.org/10.1007/s10015-022-00754-x

共著

Takeuchi, T., Matsubara, H., Minamitani, F., Satoh, Y., Tozawa, S., Moriyama, T., Maruyama, K., Suzuki, K. T., Shigenobu, S., Inoue, T., Tamura, K., Agata, K., & Hayashi, T. (2022). Newt Hoxa13 has an essential and predominant role in digit formation during development and regeneration. Development (Cambridge, England), 149(5), dev200282. https://doi.org/10.1242/dev.200282 

共著

Uchida, Y., Shigenobu, S., Takeda, H., Furusawa, C., & Irie, N. (2022). Potential contribution of intrinsic developmental stability toward body plan conservation. BMC biology, 20(1), 82. https://doi.org/10.1186/s12915-022-01276-5 

共著

Okamoto, S., Kawasaki, A., & Makino, Y. (2022). Characterization of Oligopeptides in Solanum lycopersicum Xylem Exudates. Life (Basel, Switzerland), 12(4), 592. https://doi.org/10.3390/life12040592 

共著

Yoshida, Y., Shaikhutdinov, N., Kozlova, O., Itoh, M., Tagami, M., Murata, M., Nishiyori-Sueki, H., Kojima-Ishiyama, M., Noma, S., Cherkasov, A., Gazizova, G., Nasibullina, A., Deviatiiarov, R., Shagimardanova, E., Ryabova, A., Yamaguchi, K., Bino, T., Shigenobu, S., Tokumoto, S., Miyata, Y., … Kikawada, T. (2022). High quality genome assembly of the anhydrobiotic midge provides insights on a single chromosome-based emergence of extreme desiccation tolerance. NAR genomics and bioinformatics, 4(2), lqac029. https://doi.org/10.1093/nargab/lqac029 

共著

Hayakawa, E., Guzman, C., Horiguchi, O., Kawano, C., Shiraishi, A., Mohri, K., Lin, M. F., Nakamura, R., Nakamura, R., Kawai, E., Komoto, S., Jokura, K., Shiba, K., Shigenobu, S., Satake, H., Inaba, K., & Watanabe, H. (2022). Mass spectrometry of short peptides reveals common features of metazoan peptidergic neurons. Nature ecology & evolution, 6(10), 1438–1448. https://doi.org/10.1038/s41559-022-01835-7 

共著

Kanamori, S., Díaz, L. M., Cádiz, A., Yamaguchi, K., Shigenobu, S., & Kawata, M. (2022). Draft genome of six Cuban Anolis lizards and insights into genetic changes during their diversification. BMC ecology and evolution, 22(1), 129. https://doi.org/10.1186/s12862-022-02086-7 

共著

Maeda, Y., Mizuuchi, R., Shigenobu, S., Shibai, A., Kotani, H., Furusawa, C., & Ichihashi, N. (2022). Experimental evidence for the correlation between RNA structural fluctuations and the frequency of beneficial mutations. RNA (New York, N.Y.), 28(12), 1659–1667. https://doi.org/10.1261/rna.079291.122 

共著

Okazaki, K., Koike, I., Kera, S., Yamaguchi, K., Shigenobu, S., Shimomura, K., & Umehara, M. (2022). Gene expression profiling before and after internode culture for adventitious shoot formation in ipecac. BMC plant biology, 22(1), 361. https://doi.org/10.1186/s12870-022-03756-w 

共著

Shikanai, Y., Asada, M., Sato, T., Enomoto, Y., Yamagami, M., Yamaguchi, K., Shigenobu, S., Kamiya, T., & Fujiwara, T. (2022). Role of GSL8 in low calcium tolerance in Arabidopsis thaliana. Plant biotechnology (Tokyo, Japan), 39(3), 221–227. https://doi.org/10.5511/plantbiotechnology.22.0421a 

共著

Shikanai, Y., Takahashi, S., Enomoto, Y., Yamagami, M., Yamaguchi, K., Shigenobu, S., Kamiya, T., & Fujiwara, T. (2022). Arabidopsis Glucan Synthase-Like1 (GSL1) Is Required for Tolerance to Low-Calcium Conditions and Exhibits a Function Comparable to GSL10. Plant & cell physiology, 63(10), 1474–1484. https://doi.org/10.1093/pcp/pcac106 

謝辞

Yorimoto, S., Hattori, M., Kondo, M., & Shigenobu, S. (2022). Complex host/symbiont integration of a multi-partner symbiotic system in the eusocial aphid Ceratovacuna japonica. iScience, 25(12), 105478. https://doi.org/10.1016/j.isci.2022.105478 

共著・謝辞　プレスリリース

Maeda, T., Takahashi, S., Yoshida, T., Shimamura, S., Takaki, Y., Nagai, Y., Toyoda, A., Suzuki, Y., Arimoto, A., Ishii, H., Satoh, N., Nishiyama, T., Hasebe, M., Maruyama, T., Minagawa, J., Obokata, J., & Shigenobu, S. (2021). Chloroplast acquisition without the gene transfer in kleptoplastic sea slugs, Plakobranchus ocellatus. eLife, 10, e60176. https://doi.org/10.7554/eLife.60176

共著　プレスリリース

Hasegawa, Y., Ueno, S., Wei, F. J., Matsumoto, A., Uchiyama, K., Ujino-Ihara, T., Hakamata, T., Fujino, T., Kasahara, M., Bino, T., Yamaguchi, K., Shigenobu, S., Tsumura, Y., & Moriguchi, Y. (2021). Identification and genetic diversity analysis of a male-sterile gene (MS1) in Japanese cedar (Cryptomeria japonica D. Don). Scientific reports, 11(1), 1496. https://doi.org/10.1038/s41598-020-80688-1 

共著　プレスリリース

Miyazaki, S., Fujiwara, K., Kai, K., Masuoka, Y., Gotoh, H., Niimi, T., Hayashi, Y., Shigenobu, S., & Maekawa, K. (2021). Evolutionary transition of doublesex regulation from sex-specific splicing to male-specific transcription in termites. Scientific reports, 11(1), 15992. https://doi.org/10.1038/s41598-021-95423-7

謝辞　プレスリリース

Koga, N., Koga, R., Liu, G., Castellanos, J., Montelione, G. T., & Baker, D. (2021). Role of backbone strain in de novo design of complex α/β protein structures. Nature communications, 12(1), 3921. https://doi.org/10.1038/s41467-021-24050-7 

謝辞　プレスリリース

Matsuo, M., & Kurihara, K. (2021). Proliferating coacervate droplets as the missing link between chemistry and biology in the origins of life. Nature communications, 12(1), 5487. https://doi.org/10.1038/s41467-021-25530-6 

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Yokoi, N., Fukata, Y., Okatsu, K., Yamagata, A., Liu, Y., Sanbo, M., Miyazaki, Y., Goto, T., Abe, M., Kassai, H., Sakimura, K., Meijer, D., Hirabayashi, M., Fukai, S., & Fukata, M. (2021). 14-3-3 proteins stabilize LGI1-ADAM22 levels to regulate seizure thresholds in mice. Cell reports, 37(11), 110107. https://doi.org/10.1016/j.celrep.2021.110107 

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Fukata, Y., Chen, X., Chiken, S., Hirano, Y., Yamagata, A., Inahashi, H., Sanbo, M., Sano, H., Goto, T., Hirabayashi, M., Kornau, H. C., Prüss, H., Nambu, A., Fukai, S., Nicoll, R. A., & Fukata, M. (2021). LGI1-ADAM22-MAGUK configures transsynaptic nanoalignment for synaptic transmission and epilepsy prevention. Proceedings of the National Academy of Sciences of the United States of America, 118(3), e2022580118. https://doi.org/10.1073/pnas.2022580118 

謝辞　プレスリリース

Pan, X., Tokutsu, R., Li, A., Takizawa, K., Song, C., Murata, K., Yamasaki, T., Liu, Z., Minagawa, J., & Li, M. (2021). Structural basis of LhcbM5-mediated state transitions in green algae. Nature plants, 7(8), 1119–1131. https://doi.org/10.1038/s41477-021-00960-8

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Igawa-Ueda, K., Ikuta, T., Tame, A., Yamaguchi, K., Shigenobu, S., Hongo, Y., Takaki, Y., Fujikura, K., Maruyama, T., & Yoshida, T. (2021). Symbiont Transmission onto the Cell Surface of Early Oocytes in the Deep-Sea Clam Phreagena okutanii. Zoological science, 38(2), 140–147. https://doi.org/10.2108/zs200129 

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Jang, S., Mergaert, P., Ohbayashi, T., Ishigami, K., Shigenobu, S., Itoh, H., & Kikuchi, Y. (2021). Dual oxidase enables insect gut symbiosis by mediating respiratory network formation. Proceedings of the National Academy of Sciences of the United States of America, 118(10), e2020922118. https://doi.org/10.1073/pnas.2020922118 

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Korgaonkar, A., Han, C., Lemire, A. L., Siwanowicz, I., Bennouna, D., Kopec, R. E., Andolfatto, P., Shigenobu, S., & Stern, D. L. (2021). A novel family of secreted insect proteins linked to plant gall development. Current biology : CB, 31(9), 1836–1849.e12. https://doi.org/10.1016/j.cub.2021.01.104 

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Lee, J., Nishiyama, T., Shigenobu, S., Yamaguchi, K., Suzuki, Y., Shimada, T., Katsuma, S., & Kiuchi, T. (2021). The genome sequence of Samia ricini, a new model species of lepidopteran insect. Molecular ecology resources, 21(1), 327–339. https://doi.org/10.1111/1755-0998.13259 

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Sato, K., Uehara, T., Holbein, J., Sasaki-Sekimoto, Y., Gan, P., Bino, T., Yamaguchi, K., Ichihashi, Y., Maki, N., Shigenobu, S., Ohta, H., Franke, R. B., Siddique, S., Grundler, F. M. W., Suzuki, T., Kadota, Y., & Shirasu, K. (2021). Transcriptomic Analysis of Resistant and Susceptible Responses in a New Model Root-Knot Nematode Infection System Using Solanum torvum and Meloidogyne arenaria. Frontiers in plant science, 12, 680151. https://doi.org/10.3389/fpls.2021.680151 

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Subhankar, B., Yamaguchi, K., Shigenobu, S., & Aoki, K. (2021). Trans-species small RNAs move long distances in a parasitic plant complex. Plant biotechnology (Tokyo, Japan), 38(2), 187–196. https://doi.org/10.5511/plantbiotechnology.21.0121a 

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Zeng, C. W., Kamei, Y., Shigenobu, S., Sheu, J. C., & Tsai, H. J. (2021). Injury-induced Cavl-expressing cells at lesion rostral side play major roles in spinal cord regeneration. Open biology, 11(2), 200304. https://doi.org/10.1098/rsob.200304 

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Fukutomi, Y., Kondo, S., Toyoda, A., Shigenobu, S., & Koshikawa, S. (2021). Transcriptome analysis reveals wingless regulates neural development and signaling genes in the region of wing pigmentation of a polka-dotted fruit fly. The FEBS journal, 288(1), 99–110. https://doi.org/10.1111/febs.15338 

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Tominaga, T., Miura, C., Sumigawa, Y., Hirose, Y., Yamaguchi, K., Shigenobu, S., Mine, A., & Kaminaka, H. (2021). Conservation and Diversity in Gibberellin-Mediated Transcriptional Responses Among Host Plants Forming Distinct Arbuscular Mycorrhizal Morphotypes. Frontiers in plant science, 12, 795695. https://doi.org/10.3389/fpls.2021.795695 

共著　プレスリリース

Gu, N., Tamada, Y., Imai, A., Palfalvi, G., Kabeya, Y., Shigenobu, S., Ishikawa, M., Angelis, K. J., Chen, C., & Hasebe, M. (2020). DNA damage triggers reprogramming of differentiated cells into stem cells in Physcomitrella. Nature plants, 6(9), 1098–1105. https://doi.org/10.1038/s41477-020-0745-9 

共著　プレスリリース

Cui, S., Kubota, T., Nishiyama, T., Ishida, J. K., Shigenobu, S., Shibata, T. F., Toyoda, A., Hasebe, M., Shirasu, K., & Yoshida, S. (2020). Ethylene signaling mediates host invasion by parasitic plants. Science advances, 6(44), eabc2385. https://doi.org/10.1126/sciadv.abc2385 

共著　プレスリリース

Palfalvi, G., Hackl, T., Terhoeven, N., Shibata, T. F., Nishiyama, T., Ankenbrand, M., Becker, D., Förster, F., Freund, M., Iosip, A., Kreuzer, I., Saul, F., Kamida, C., Fukushima, K., Shigenobu, S., Tamada, Y., Adamec, L., Hoshi, Y., Ueda, K., Winkelmann, T., … Hedrich, R. (2020). Genomes of the Venus Flytrap and Close Relatives Unveil the Roots of Plant Carnivory. Current biology : CB, 30(12), 2312–2320.e5. https://doi.org/10.1016/j.cub.2020.04.051 

共著　プレスリリース

Kurihara, M., Kato, K., Sanbo, C., Shigenobu, S., Ohkawa, Y., Fuchigami, T., & Miyanari, Y. (2020). Genomic Profiling by ALaP-Seq Reveals Transcriptional Regulation by PML Bodies through DNMT3A Exclusion. Molecular cell, 78(3), 493–505.e8. https://doi.org/10.1016/j.molcel.2020.04.004 

共著　プレスリリース

Kanazawa, T., Morinaka, H., Ebine, K., Shimada, T. L., Ishida, S., Minamino, N., Yamaguchi, K., Shigenobu, S., Kohchi, T., Nakano, A., & Ueda, T. (2020). The liverwort oil body is formed by redirection of the secretory pathway. Nature communications, 11(1), 6152. https://doi.org/10.1038/s41467-020-19978-1 

共著　プレスリリース

Hasegawa, Y., Ueno, S., Wei, F. J., Matsumoto, A., Ujino-Ihara, T., Uchiyama, K., Moriguchi, Y., Kasahara, M., Fujino, T., Shigenobu, S., Yamaguchi, K., Bino, T., & Hakamata, T. (2020). Development of diagnostic PCR and LAMP markers for MALE STERILITY 1 (MS1) in Cryptomeria japonica D. Don. BMC research notes, 13(1), 457. https://doi.org/10.1186/s13104-020-05296-8 

謝辞　プレスリリース

Kawade, K., Horiguchi, G., Hirose, Y., Oikawa, A., Hirai, M. Y., Saito, K., Fujita, T., & Tsukaya, H. (2020). Metabolic Control of Gametophore Shoot Formation through Arginine in the Moss Physcomitrium patens. Cell reports, 32(10), 108127. https://doi.org/10.1016/j.celrep.2020.108127 

謝辞　プレスリリース

Kinoshita, N., Hashimoto, Y., Yasue, N., Suzuki, M., Cristea, I. M., & Ueno, N. (2020). Mechanical Stress Regulates Epithelial Tissue Integrity and Stiffness through the FGFR/Erk2 Signaling Pathway during Embryogenesis. Cell reports, 30(11), 3875–3888.e3. https://doi.org/10.1016/j.celrep.2020.02.074 

謝辞　プレスリリース

Koga, R., Yamamoto, M., Kosugi, T., Kobayashi, N., Sugiki, T., Fujiwara, T., & Koga, N. (2020). Robust folding of a de novo designed ideal protein even with most of the core mutated to valine. Proceedings of the National Academy of Sciences of the United States of America, 117(49), 31149–31156. https://doi.org/10.1073/pnas.2002120117

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Vu, T. D., Iwasaki, Y., Shigenobu, S., Maruko, A., Oshima, K., Iioka, E., Huang, C. L., Abe, T., Tamaki, S., Lin, Y. W., Chen, C. K., Lu, M. Y., Hojo, M., Wang, H. V., Tzeng, S. F., Huang, H. J., Kanai, A., Gojobori, T., Chiang, T. Y., Sun, H. S., … Okada, N. (2020). Behavioral and brain- transcriptomic synchronization between the two opponents of a fighting pair of the fish Betta splendens. PLoS genetics, 16(6), e1008831. https://doi.org/10.1371/journal.pgen.1008831 

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Araki, K. S., Nagano, A. J., Nakano, R. T., Kitazume, T., Yamaguchi, K., Hara-Nishimura, I., Shigenobu, S., & Kudoh, H. (2020). Characterization of rhizome transcriptome and identification of a rhizomatous ER body in the clonal plant Cardamine leucantha. Scientific reports, 10(1), 13291. https://doi.org/10.1038/s41598-020-69941-9 

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Feng, Z., Nagao, H., Li, B., Sotta, N., Shikanai, Y., Yamaguchi, K., Shigenobu, S., Kamiya, T., & Fujiwara, T. (2020). An SMU Splicing Factor Complex Within Nuclear Speckles Contributes to Magnesium Homeostasis in Arabidopsis. Plant physiology, 184(1), 428–442. https://doi.org/10.1104/pp.20.00109 

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Shikanai, Y., Yoshida, R., Hirano, T., Enomoto, Y., Li, B., Asada, M., Yamagami, M., Yamaguchi, K., Shigenobu, S., Tabata, R., Sawa, S., Okada, H., Ohya, Y., Kamiya, T., & Fujiwara, T. (2020). Callose Synthesis Suppresses Cell Death Induced by Low-Calcium Conditions in Leaves. Plant physiology, 182(4), 2199–2212. https://doi.org/10.1104/pp.19.00784 

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Shimada, T. L., Yamaguchi, K., Shigenobu, S., Takahashi, H., Murase, M., Fukuyoshi, S., & Hara-Nishimura, I. (2020). Excess sterols disrupt plant cellular activity by inducing stress-responsive gene expression. Journal of plant research, 133(3), 383–392. https://doi.org/10.1007/s10265-020-01181-4 

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Li, Y., Omori, A., Flores, R. L., Satterfield, S., Nguyen, C., Ota, T., Tsurugaya, T., Ikuta, T., Ikeo, K., Kikuchi, M., Leong, J. C. K., Reich, A., Hao, M., Wan, W., Dong, Y., Ren, Y., Zhang, S., Zeng, T., Uesaka, M., Uchida, Y., … Irie, N. (2020). Genomic insights of body plan transitions from bilateral to pentameral symmetry in Echinoderms. Communications biology, 3(1), 371. https://doi.org/10.1038/s42003-020-1091-1 

共著

Bessho-Uehara, M., Yamamoto, N., Shigenobu, S., Mori, H., Kuwata, K., & Oba, Y. (2020). Kleptoprotein bioluminescence: Parapriacanthus fish obtain luciferase from ostracod prey. Science advances, 6(2), eaax4942. https://doi.org/10.1126/sciadv.aax4942 

共著

Yano, H., Alam, M. Z., Rimbara, E., Shibata, T. F., Fukuyo, M., Furuta, Y., Nishiyama, T., Shigenobu, S., Hasebe, M., Toyoda, A., Suzuki, Y., Sugano, S., Shibayama, K., & Kobayashi, I. (2020). Networking and Specificity-Changing DNA Methyltransferases in Helicobacter pylori. Frontiers in microbiology, 11, 1628. https://doi.org/10.3389/fmicb.2020.01628 

共著

Mondal, S. I., Akter, A., Koga, R., Hosokawa, T., Dayi, M., Murase, K., Tanaka, R., Shigenobu, S., Fukatsu, T., & Kikuchi, T. (2020). Reduced Genome of the Gut Symbiotic Bacterium "Candidatus Benitsuchiphilus tojoi" Provides Insight Into Its Possible Roles in Ecology and Adaptation of the Host Insect. Frontiers in microbiology, 11, 840. https://doi.org/10.3389/fmicb.2020.00840 

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Sakuta, H., Lin, C. H., Hiyama, T. Y., Matsuda, T., Yamaguchi, K., Shigenobu, S., Kobayashi, K., & Noda, M. (2020). SLC9A4 in the organum vasculosum of the lamina terminalis is a [Na+] sensor for the control of water intake. Pflugers Archiv : European journal of physiology, 472(5), 609–624. https://doi.org/10.1007/s00424-020-02389-y 

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Tominaga, T., Yamaguchi, K., Shigenobu, S., Yamato, M., & Kaminaka, H. (2020). The effects of gibberellin on the expression of symbiosis-related genes in Paris-type arbuscular mycorrhizal symbiosis in Eustoma grandiflorum. Plant signaling & behavior, 15(9), 1784544. https://doi.org/10.1080/15592324.2020.1784544